Prosecutors have up to 10 days to indict Lee, Samsung’s third-generation leader, although they can seek an extension. After indictment, a court would be required to make a ruling within three months.
No decision had been made on whether Lee’s arrest would be contested or whether bail would be sought, a spokeswoman for Samsung Group said.
Samsung and Lee have denied wrongdoing in the case.
“We will do our best to ensure that the truth is revealed in future court proceedings,” the Samsung Group said in a brief statement after Lee’s arrest.
The same court had rejected a request last month to arrest Lee, but prosecutors on Tuesday brought additional accusations against Lee, seeking his arrest on bribery and other charges.
“We acknowledge the cause and necessity of the arrest,” a judge said in his ruling.
The judge rejected the prosecution’s request to arrest Samsung Electronics president Park Sang-jin.